When Pokkén Tournament releases for the Wii U next month, it will be compatible with every amiibo. However, the game will limit amiibo usage to five times per day, much like Hyrule Warriors. [Thanks, Nintendo Everything.]
The video below gives us a good look at the amiibo functionality in action using a few different amiibos, including Pikachu, Yoshi, and Link.
Pokkén Tournament will release worldwide for the Wii U on March 18th.