People will want to be very careful when driving around in Sophia III in Blaster Master Zero. A big part of the game is leaving the car in the platforming overworld so Jason can enter top-down shooter dungeons. The problem is, Blaster Master Zero features the same quirks as the original game. That is, if you park Sophia III on a platform that is too high for Jason to reach after he exits it, you will be trapped outside of the car with no means to get back to it.
This video from Nintendo World Report takes three minutes to show how frustrating this issue can be and why you will always want to properly park in Blaster Master Zero. Fortunately, resetting and picking a previous save file should save you, unless you last saved within a dungeon after parking Sophia III in a bad position.
Blaster Master Zero is available for the Nintendo 3DS and Nintendo Switch.